Converts a MACSIM XML file to FASTA format and extracts annotations to TXT. with open(fasta_path, "w", encoding="utf-8") as f_fasta, \ open(txt_path, "w", encoding ...
sina -i aligned_withmetadata.fa --prealigned --outtype arb -o gtdb_ssu.arb description="Add tax_gtdb/tax_slv SINA metadata to an already aligned FASTA." parser.add ...