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A collection of Python scripts for common bioinformatics tasks involving FASTA files.

Removes gap characters (-) from sequences in FASTA or plain text files. Translates DNA sequences from a FASTA file into protein sequences. Purpose: Converts coding DNA sequences into their ...
GitHub

Parsing and handling FASTA sequence data using Python and Biopython

This project demonstrates foundational computational biology skills for parsing and handling biological sequence data in FASTA format using Python. The notebook focuses on reading sequence files, ...
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[Python Script Release] Automatic Generation of Paired-End FASTQ from FASTA Sequences ...

There are many situations in genome analysis practice or tool validation where you want to use 'virtual Illumina reads.' Therefore, I am releasing a Python script that can generate Illumina-format ...
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FASTAファイルを染色体ごとに分割するPythonスクリプト：split_fasta.py

NGS解析や遺伝子解析を行う際、FASTAファイルを染色体ごとに分割したい場面が多々あります。そこで、Pythonを使って簡単に染色体ごとにFASTAファイルを分割し、元のディレクトリに出力するスクリプトを作成しました。 このスクリプトは、染色体（または ...