I: Loading resource table... [3.136s][warning][gc,alloc] pool-1-thread-3: Retried waiting for GCLocker too often allocating 2398486 words [3.162s][warning][gc,alloc] pool-1-thread-9: Retried waiting ...
at java.base/java.util.concurrent.FutureTask.report(Unknown Source) at java.base/java.util.concurrent.FutureTask.get(Unknown Source) at edu.umich.andykong.msfragger ...
I'd say the problem is that you're even dealing with a 2Gb XML file to begin with. XML is designed mostly as a method to exchange data between programs. What it looks like you're doing here is using ...