Technology-invariant pipeline for spatial omics analysis that scales to millions of cells (Xenium / Visium HD / MERSCOPE / CosMx / PhenoCycler / MACSima / etc) - prism-oncology/sopa ...
Xenium Explorer bundles contain morphology images alongside spatial transcriptomics data. This project registers those external TIFFs into Xenium pixel coordinates, overlays them interactively with ...